#if !defined(READ_OPTIONS_H)
	#define READ_OPTIONS_H


	#include "std_options.h"
	#include <vector>
	#include <string>
//________________________________________________________________________________________
// 
// 		read_options
//________________________________________________________________________________________
class prog_options : public t_std_options
{
private:
public:
	prog_options():
	t_std_options(
				 // description
				"Remove duplicate (same template) and unmapped reads.\n",
				// program usage
				"--input_file FILE --output_file FILE \n"
				"[--input_file FILE] ",                       
				 // version
				 "1.0 16 August 2011",
				 // use summary file
				 true
				 )
	{}
	std::vector<std::string>    input_filenames;
	std::string                 output_filename;

};

bool read_options(prog_options& opt, int argc, char *argv[]);
#endif



